Auf dieser Seite finden Sie die vom ZBH angebotenen Dienste.
- WURST
It takes a protein sequence, aligns it to a library of structures and mails structure predictions back to you (protein threading).
- SALAMI
This takes a protein structure (PDB format) or asks for the name of a PDB file. This is then compared against structures from the PDB. After about 20 minutes, you will receive a set of structural alignments, completely independent of sequence identity. The service is similar to that provided by dali.
- FTreesWeb
From standard databases of thousands of compounds, FTreesWeb can identify similar compounds to your query compound - in just seconds!
- PoseViewWeb
PoseViewWeb automatically creates two-dimensional diagrams of complexes with known complex structure according to chemical standards. A diagram contains the ligand, the amino acids of the receptor which interact with the ligand, and the hydrophilic interactions schematized as dashed lines between the corresponding atoms.
- SMARTSviewer
The SMARTSviewer provides a visualization for SMARTS strings. The depiction is based on structure diagrams as known from standard molecule visualization. Complex SMARTS pattern are splitted in more simple parts by extracting the recursive parts in separate structure diagrams. A legend explains the new graphic symbols as well as the meaning of the SMARTS in words.
- PPI Server
PPI Prediction Server classifies a protein-protein complex concerning its interaction type into permanent, transient or crystal artifact. The discrimination is performed using two characteristics of the protein-protein complex, the hydrophobicity of the interface and the quotient of interface area ratios.
- DoGSiteScorer Server
DoGSiteScorer is an automated pocket detection and analysis tool. Size, shape and physico-chemical features of automatically predicted pockets are annotated and incorporated into a support vector machine for druggability estimations.
